Welcome to the Documentation for Fast Stokesian DynamicsΒΆ

This is the documentation for the HOOMD plugin to perform Fast Stokesian Dynamics (FSD) simulations. It provides an introduction to installing both HOOMD and the plugin, as well as a description of the functions contained within the plugin, as well as sample script to perform a simple simulation.

Some potentially non-obvious computational tricks that have been used are given in Computational Tricks. It may be worth looking through that section if parts of the code are unclear.