#NEXUS [written Thu Oct 22 11:56:17 BST 2015 by Mesquite version 3.04 (build 725) at ESCI-5BV0H62/157.140.110.4 (Greg Edgecombe)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=59; TAXLABELS Fortiforceps Haikuocaris Aglaspella Aglaspis Australaglaspis Beckwithia Buenaspis Burgessia Cheloniellon Chlupacaris Chraspedops Cindarella Cyclopites Dicranocaris Duslia Emeraldella Eoredlichia Kwanyinaspis Eurypterida Flobertia Glypharthrus_simplex Alalcomaneus Helmetia Jianfengia Kodymirus Kuamaia Leanchoilia Liwia Marrella Mimetaster Misszhouia Naraoia_compacta Naraoia_spinosa Neostrabops Nettapezoura Olenoides Pseudoarthron Pycnogonida Quasimodaspis Retifacies Saperion Sidneyia Sinoburius Skioldia Soomaspis Tariccoia Tegopelte Tremaglaspis Triopus Uarthrus Weinbergina Xandarella Yohoia Rebachiella Martinssonia Nebalia Chinese_arthropod Squamacula Eozetetes_ ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "Eozetes_Ortega-Hernandez.nex"'; DIMENSIONS NCHAR=82; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8"; CHARSTATELABELS 1 Nature_of_first_cephalic_appendage / raptorial_appendage antennae, 2 'Number of spine-bearing podomeres in raptorial appendage' / four three two, 3 Distal_spines_of_raptorial_appendage_terminating_in_annulated_flagellae / absent present, 4 Length_of_distal_spines_on_terminal_podomeres_of_first_appendage / absent_or_shorter_than_podomere subequal_to_length_of_podomeres longer_than_entire_podomere_series, 5 'Number of appendages bearing post-ocular segments incorporated into head/prosoma' / none one two three four five six seven, 6 'Nature of second (first post-antennal/raptorial) cephalic appendage' / biramous_walking_leg_or_antennae uniramous_walking_leg, 7 'Nature of third (second post-antennal/raptorial) cephalic appendage' / biramous_walking_leg uniramous_walking_leg, 8 'Appendages of first thoracic somite underneath the cephalo-thoracic articulation' / absent present, 9 Trunk_endopods / absent_or_reduced present, 10 Exopod_structure / simple_oval_flap 'exopod differentiated into proximal and distal lobes, the proximal lobe bearing lamellar setae, the distal lobe bearing short setae' 'numerous podomeres, each bearing a single seta' undivided_exopod_with_lamellar_setae book_gills, 11 Proximal_lobe_of_exopod / flattened_lobe slender_shaft, 12 Distal_lobe_of_exopod / small_to_moderate_sized_flap 'large, teardrop shaped lobe with long attachment', 13 Divided_exopod_with_septum / absent present, 14 Imbricate_exopod_lamellae / absent present, 15 Lamellae / 'thick, flat lamellae' 'delicate, comb-like lamellae', 16 'Non-overlapping marginal setae' / absent small_setae long_spines_or_filaments, 17 Gnathobasic_limbs / absent present, 18 Lateral_eyes / absent present, 19 Nature_of_lateral_eyes / staked sessile, 20 Ventral_eyes_in_front_of_head / absent present, 21 'Visual surface with calcified lenses, bounded with circumocular suture' / absent present, 22 'Dorsal bulge in exoskeleton accommodating drop-shaped ventral eyes' / absent present, 23 Eye_slits / absent present, 24 Dorsal_median_eyes / absent present, 25 Free_head_shield / absent present, 26 Bivalved_head_shield / absent present, 27 Expanded_cephalic_doublure / absent present, 28 'Anteromedian margin of cephalon notched, accommodating strongly sclerotised plate' / absent present, 29 Hypostomal_sclerite / 'median extension of the doublure, with no suture' 'natant, sclerite not in contact with doublure' 'with narrow overlap with pre-hypostomal sclerite' narrow_attachment_to_doublure_at_hypostomal_suture absent, 30 Arcuate_anterior_sclerite / absent present, 31 Visible_ecdysial_dorsal_sutures / absent present, 32 Position_of_ecdysial_sutures / marginal dorsal, 33 Elevated_marginal_rim / absent present, 34 Marginal_rim_ornamented / absent present, 35 Glabellar_furrows_or_lobes / absent present, 36 Carapace_outline / genal_spines acute_genal_angles rounded_genal_angles 'lateral spine-like extensions of the carapace', 37 Posterior_cephalic_band / absent present, 38 Cephalic_furrows / absent present, 39 Cuticle_sculpture / absent present, 40 Mineralized_cuticle / absent present, 41 Trunk_tergites_with_expanded_lateral_pleurae_covering_appendages_dorsally / absent present, 42 Free_thoracic_tergites / absent present, 43 Decoupling_of_thoracic_tergites_and_segments / absent present, 44 Tergite_articulations / 'tergites non-overlapping' extensive_overlap_of_tergites 'edge-to-edge pleural articulations', 45 Dorsal_trunk_effacement / 'trunk with defined (separate or fused) tergite boundaries' trunk_tergite_boundaries_effaced_laterally trunk_tergite_boundaries_completely_effaced, 46 Cephalic_articulation_fused / absent present, 47 Head_shield_overlap_of_thoracic_tergites / overlap_absent_or_identical_to_overlap_between_thoracic_segments head_shield_covers_first_thoracic_tergite_only head_shield_covers_multiple_anterior_trunk_tergites, 48 Head_shield_articulates_with_reduced_anteriro_thoracic_tergite / absent present, 49 'Trunk narrowed anteriorly relative to head shield, widest posteriorly' / absent present, 50 Boundaries_of_anterior_trunk_segments_reflexed_anterolaterally / 'absent, boundaries transverse or reflexed posterolaterally' present, 51 'Joints between posterior tergites functional, anterior ones variably fusd' / absent present, 52 Posterior_tergite_bearing_axial_spine / absent present, 53 Radial_arrangement_of_pleurae / absent present, 54 Raised_axial_region / absent present, 55 Anterior_tergal_processes / absent present, 56 Tuberculation_of_posterior_margin_of_tergites / absent present, 57 Axial_spines / absent present, 58 Length_of_postabdomen / 1_segment 2_segments 3_segments 5_segments, 59 Postabdomen_expressed_as_posterior_segments_lacking_walking_legs / absent present, 60 Postabdomen_expressed_as_posterior_differentiated_segments / absent present, 61 Posterior_tergites_strongly_curved_in_dorsal_aspect_compared_to_anterior_tergites / absent present, 62 Pygidium / absent present, 63 Position_of_the_anus / 'terminal, within telson' at_base_of_telson, 64 Pygidium_with_median_keel / absent present, 65 'Pygidium with broad-based median spine' / absent present, 66 Pygidium_with_lateral_spines / absent present, 67 Tailspine / absent present, 68 Tailspine_shape / spinose 'paddle-shapped' 'cap-like' State_3, 69 Anterior_expansion_of_the_tailspine / absent present, 70 Length_of_tailspine / shorter_than_half_the_length_of_the_trunk longer_than_half_the_length_of_the_trunk, 71 Spines_on_tailspine / absent present, 72 Tailspine_with_median_cleft / absent present, 73 Paddle_with_projections / absent present, 74 Postventral_plates / absent present, 75 'Paired modified appendages attached to a differentiated pre-terminal segment' / absent present, 76 'Nature of pre-terminal appendages' / uropods furca, 77 Reduced_carapace / absent present, 78 Width_of_doublure / narrow_to_moderately_wide wide covers_entire_ventral_side_of_cephalon, 79 Relative_length_of_thorax / longer_than_pygidium shorter_than_pygidium, 80 Articulating_half_rings / absent present, 81 Axial_furrows / absent present, 82 Postventral_plate_medial_attachment / narrow_attachment_by_central_portion wide_longitudinal_attachment ; MATRIX Fortiforceps 0201400010---0-1010100000-00400-0-02000011010000000000000-00001---100000000-0?-00- Haikuocaris 0101400010---0-2010100000-00400-0-01000011010000000000000-00001---100010-00-00-00- Aglaspella ?????????????????11-00000-10?00-1011011111?1000000000010021010?---101100-10-00-000 Aglaspis 1--04??11????????11-00000-10000-111011111101000000000011021010?---101100-10-00-000 Australaglaspis ????????1????????11-00000-?0000-10110?0111?10000000000?0?21010?---100101-10-0?-001 Beckwithia ?????????????????11-00000-10?00-1110001111?10000000?00001??010?---100100-?0-00-00? Buenaspis ????????????????????00000-10?00-0-02000011?10000100000000-00011?000------00-00010- Burgessia 1--0400010---0-000----000-10400-0-02000001000020000000000-00001---100100-00-0--00- Cheloniellon 1--0511010---0-1111-00000-10100-0-0200101101000001001100001110?---120000-01110-01- Chlupacaris ?????????????????11-?0000-10100-1??2?0?111???0??000000?00?1??0?---100000-10-00-001 Chraspedops ?????????????????11-00000-10?00-1011011111?100000000001002?010?---100101-?0-00-00? Cindarella 1--0500011001111010000000-10100-0-01000011110021000100000-001110010------00-00000- Cyclopites ?????????????????11-00000-10?00-1002000111?1000000000010021010?---100100-10-00-00? Dicranocaris ?????????????????????0000-?0?00-0-01000011?10000000000000211001---110010100-0?-00- Duslia 1????????????????????0000-?0?00-0-12000011?1000001001100001110?---120000-0110?-01- Emeraldella 1--041001100110110----000-10000-0-01000011010000000000100011101---100100-01000-00- Eoredlichia 1--0400111000101111-10000-1030111010000111020000000001000-001110000------00-00011- Kwanyinaspis 1--0?00?11000101110001000-10000-1011000011020000010000000??010?---100000-?0-00-?0? Eurypterida 0201611004---0-0111-00010-1040101001001011010000000000000311001---100100-00-00-00- Flobertia ????????1????????11-00000-10000-10?2001111?100000?0000100??0?0????????????0?00?00? Glypharthrus_simplex ?????????????????11-00000-10?00-1000111111?1000000000011021010?---101100-10-0--001 Alalcomaneus 0112400010---0-2110100000-00400-0-01000011010000000000000-00001---110010000-00-00- Helmetia ????4????????????1000?000-11210-0-01000011020000011000000-?00110110------00-000?0- Jianfengia 0001400010---0-1010100000-?0400-0-01000011010000000000000-00001---100000-00-0?-00- Kodymirus ?????????????????11-00000-10000-0-11001011?10000000000001-?010?---101100-00-00-00- Kuamaia 1--0?00?11011100110001000-11210-0-01000011020000011001000-000110110------00-000?0- Leanchoilia 0112400010---0-2110?00000-00400-0-01000011010000000000000-00101---100010-00-0--00- Liwia 1--0?00?11???1?????????00-?0?0??0-01000011010010100000000-?00111010------00-0?100- Marrella 1--021-012---0--00----000-00?00-0-030000010000200000-0000-00000---100000-00-0--00- Mimetaster 1--0311012---0--010000000-00100-0-030000010000200000-0000-00000---100000-00-0--00- Misszhouia 1--0500111101111110000000-10110-0-020000100-2000100000000-00-110000------00-00?00- Naraoia_compacta 1--0500111101111110000000-10100-0-020000100-2000100000000-00-110000------00-00?00- Naraoia_spinosa 1--0500111000111110000000-10100-0-000000100-2000100000000-00-110010------00-00?00- Neostrabops ?????????????????11-00000-?0?00-0-02000011?10000010000000?0?10??????????????1?-00? Nettapezoura ?????????0---0?1?????0000-?0?00-0-01000011?10000000000000111001---110000100-0?-00- Olenoides 1--0400111001101111-10000-1030111010001111020000000001000-000110010------00-00-11- Pseudoarthron ?????????????????????000???0??0-0-02000011?10000010011000?0?00?????????????????01? Pycnogonida 020171100----0-0011-00010-00400-0-0-0000010000000000-0000?11100---100000-00----00- Quasimodaspis ?????????????????11-00000-10?00-1011000111?10000000001?00??010?---100000-?0-00-?0? Retifacies 1--0400?13---101110000000-10000-0-00000011010000000000000-00111001100100-00-00000- Saperion 1--0?0??11011100010001000-11210-0-0-0000100-11--001000000-00-110000------00-00?00- Sidneyia 1--011-013??-100110000000-1000??0-01000011010000000000000211101---110000001002-00- Sinoburius 1--0500011???10??10001100-10100-0-00000011010021000100000-000110110------00-00000- Skioldia 1--0?00?11???10??10001000-11210-0-0-000011?-11--001000000-00-110000------00-00?00- Soomaspis ?????????????????????0000-10?00-0-02000011?10010100000000-000111000------00-01110- Tariccoia ?????????????????????0000-10?00-0-02000011?10010100000000-000111000------00-01100- Tegopelte 1--0?00?1???????0100??000-11210-0-0-000010?-?1--00?000000-00-110000------00-00?00- Tremaglaspis ?????????????????0--?0000-10100-0-02000111?1000000000110021100?---10?000-10-00-001 Triopus ?????????????????0--00000-?0?00-0-12000011?1000001001100001110?---120000-0??1?-01- Uarthrus ?????????????????11-00000-10?00-???1001111?10000000000?0021010?---100100-10-00-000 Weinbergina 0201611004---0-0111-00010-1040101001000011010000000001000211001---100000-00-00-01- Xandarella 1--0700011101111110000100-10100-0-01000011110021000100000-001010?10------00-00000- Yohoia 0101400010---0-1010100000-00400-0-01000011010000000000000211001---100000-00-00-00- Rebachiella 1--0500012---0--110100001100400-0-01000001000020000000000211000---13000--00-0--00- Martinssonia 1--0500012---0--10--00000000400-0-01000001000020000000000311000---13000--00-0--00- Nebalia 1--0500012---0--110100001100400-0-01000001000020000000000211000---13000--00-0--00- Chinese_arthropod ?????????????????11-00000-10?00-1010011111?200???00?0110????10?---10?000-?0-00-10? Squamacula 1--010-010---0-110--00000-10000-0-01000011010000000000000-001110000------00-02000- Eozetetes_ 1--??????????????0---0000-10?00-1001000011?10000000001000???10?---100101-0??00-00- ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = UNORD POLYTCOUNT = MINSTEPS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "Eozetes_Ortega-Hernandez.nex"') = unord: 1 - 82; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "Eozetes_Ortega-Hernandez.nex"') = 'Mk1 (est.)': 1 - 82; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1445511377300; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3353410792394691575; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6191197327721453570; mqVersion 304; checksumv 0 3 2857072359 null getNumChars 82 numChars 82 getNumTaxa 59 numTaxa 59 short true bits 255 states 255 sumSquaresStatesOnly 65123.0 sumSquares 65123.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 80; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 906; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6191197327721453570 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1200 834; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;