#NEXUS [Number of Sites in the complete Data File: 771] [Selected Region: 1-771] [Sites with alignment gaps: not considered] [Invariable sites: removed] BEGIN TAXA; DIMENSIONS NTAX=39; TAXLABELS H1 H2 H3 H4 H5 H6 H7 H8 H9 H10 H11 H12 H13 H14 H15 H16 H17 H18 H19 H20 H21 H22 H23 H24 H25 H26 H27 H28 H29 H30 H31 H32 H33 H34 H35 H36 H37 H38 H39; END; [Hap# Freq. Sequences] [H1: 3 1 9 11] [H2: 5 2 10 12 47-48] [H3: 2 3 7] [H4: 3 4 8 96] [H5: 1 5] [H6: 3 6 45-46] [H7: 3 13 15 19] [H8: 29 14 16-18 20-22 24-26 28-30 57-58 61-74] [H9: 4 23 27 75-76] [H10: 1 31] [H11: 3 32 35-36] [H12: 1 33] [H13: 1 34] [H14: 3 37 83-84] [H15: 1 38] [H16: 1 39] [H17: 1 40] [H18: 4 41-44] [H19: 6 49-54] [H20: 2 55-56] [H21: 2 59-60] [H22: 1 77] [H23: 1 78] [H24: 1 79] [H25: 1 80] [H26: 2 81-82] [H27: 1 85] [H28: 1 86] [H29: 1 87] [H30: 1 88] [H31: 1 89] [H32: 1 90] [H33: 1 91] [H34: 4 92-95] [H35: 2 97-98] [H36: 2 99-100] [H37: 2 101-102] [H38: 2 103-104] [H39: 2 105-106] [Hap# Freq. Sequences] [H1: 3 LL051-1 PalDa30-1 PalDa31-1] [H2: 5 LL051-2 PalDa30-2 PalDa31-2 PalDa-1 PalDa-2] [H3: 2 LL017-1 LL027-1] [H4: 3 LL017-2 LL027-2 PALV1Cl1-2] [H5: 1 TEV55-1] [H6: 3 TEV55-2 V81-1 V81-2] [H7: 3 CGH1-1 CGH2-1 CGH4-1] [H8: 29 CGH1-2 CGH2-2 CGH3-1 CGH3-2 CGH4-2 CGH6-1 CGH6-2 KR1-2 NINOA-1 NINOA-2 NINOA-CONGENITA-2 INC-5-1 INC-5-2 Tev91cl5-1 Tev91cl5-2 Flop2-1 Flop2-2 SEV-1 SEV-2 MG-1 MG-2 CGC-1 CGC-2 DYR-1 DYR-2 DA-1 DA-2 Necocli-1 Necocli-2] [H9: 4 KR1-1 NINOA-CONGENITA-1 SN6C-1 SN6C-2] [H10: 1 AQ1-7-1] [H11: 3 AQ1-7-2 ALVANY-1 ALVANY-2] [H12: 1 MUTUM-1] [H13: 1 MUTUM-2] [H14: 3 1240-1 TALAVERDE-1 TALAVERDE-2] [H15: 1 1240-2] [H16: 1 1527-1] [H17: 1 1527-2] [H18: 4 Coy11-1 Coy11-2 D12-1 D12-2] [H19: 6 N5P14-1 N5P14-2 Rp523-1 Rp523-2 PALC-1 PALC-2] [H20: 2 Gal61-1 Gal61-2] [H21: 2 NV-1 NV-2] [H22: 1 V195-1] [H23: 1 V195-2] [H24: 1 LGNcl7-1] [H25: 1 LGNcl7-2] [H26: 2 Sp130cl6-1 Sp130cl6-2] [H27: 1 13379cl7-1] [H28: 1 13379cl7-2] [H29: 1 Col108-1] [H30: 1 Col108-2] [H31: 1 SpGuayacan-1] [H32: 1 SpGuayacan-2] [H33: 1 PALV2-2cl5-1] [H34: 4 PALV2-2cl5-2 AS-1 AS-2 PALV1Cl1-1] [H35: 2 Cas16-1 Cas16-2] [H36: 2 Mg9-1 Mg9-2] [H37: 2 H10-1 H10-2] [H38: 2 JV-1 JV-2] [H39: 2 EFC-1 EFC-2] BEGIN CHARACTERS; DIMENSIONS NCHAR=41; FORMAT DATATYPE=DNA MISSING=? GAP=- MATCHCHAR=.; CHARLABELS [1] nt_231 [2] nt_232 [3] nt_236 [4] nt_239 [5] nt_241 [6] nt_242 [7] nt_247 [8] nt_251 [9] nt_252 [10] nt_254 [11] nt_255 [12] nt_261 [13] nt_264 [14] nt_277 [15] nt_280 [16] nt_286 [17] nt_300 [18] nt_306 [19] nt_308 [20] nt_312 [21] nt_326 [22] nt_355 [23] nt_356 [24] nt_367 [25] nt_383 [26] nt_385 [27] nt_393 [28] nt_400 [29] nt_404 [30] nt_407 [31] nt_414 [32] nt_422 [33] nt_424 [34] nt_425 [35] nt_427 [36] nt_431 [37] nt_439 [38] nt_442 [39] nt_446 [40] nt_458 [41] nt_461 ; MATRIX [ 10 20 30 40 ] [ * * * * ] H1 CCCCCCCTCATTCTCCCTGGTCCGTGCTGCCCCTTCGTGTC H2 ........T.......................G........ H3 ..G..T..T............G..........G.C....G. H4 ..G..T..T............G.......T..G......G. H5 .....................GT.........G......G. H6 ........T............GT.........G......G. H7 ........T........G...GT.C.........C....G. H8 .....T..T........G...GT.C.........C....G. H9 .....T..T........G...G..C.........C....G. H10 ..G.....T.......T....GG.........G.CT...G. H11 ..GA.T..T.......T....G..........G.CT...G. H12 ..GAAA..T.......T....G..A.......G.CT...G. H13 ..GAAA..T.......TG...G..C.......G.CT...G. H14 ..G.....T............G.....C.T..G.CT...G. H15 ..G....CT......TT.TA.G.C.AGG.TT.G.CTA..G. H16 TTGAAA..T.......T....G..........G.CT...G. H17 TTGAAA..TG......T....G..........GGCT...A. H18 ........T........G...GT......T..G......G. H19 ........T........G...G......C...G.CT...G. H20 ......G.T..GT.T..G..GG......C..GG.CT...G. H21 .....T..T........G...GT.C.........C..A.G. H22 ..G..TG.T.AG.....G...G..C.........CT..AG. H23 ..G..TG.T.AGT....G...G..C.........CT..AG. H24 ..G..T..T............G.....C.T..G......G. H25 ..G..T..T............G.....C.T..G..T...G. H26 T.G..T..T............G.....C.T..G.CT...G. H27 ......G.T...T.TG.....G.....C.T..G.C....GG H28 ..G..T..T...T.T......G..........G.CT...GG H29 ..G..T..T...T.G......G.......T..G.C....G. H30 ..G..T..T...T.T......G.....C.T..G.C....G. H31 ..G..T..T.....T......G..........G......G. H32 ..G..T..T...T.T......G.......T..G......G. H33 ..G..T..T............G.....C....G......G. H34 ..G..T..T............G.....C....G.C....G. H35 T.......T............G..C.........CT...G. H36 T.......T........G...G..C.........C....G. H37 T.......T........G...G..C.......G......G. H38 T.......T....C...G...G..C.......G......G. H39 ........T............G..........G.CT..AG. ; END; BEGIN DnaSP; Genome= Diploid; ChromosomalLocation= Autosome; VariationType= Haplotypes; DnaSPversion= Ver. 5.10.01; END;